DNA Genetic Analysis

DNA testing is a genetic analysis technique that makes it possible to identify a person from a small amount of biological samples. 

 

This analysis therefore makes it possible to define a genetic identification fingerprint which is based on the following facts:  

 

- Humans have a large majority of DNA in common

- Each individual has in his DNA a part that is unique

 

To understand how the lab shines a light on our genetic profile, you have to start from the ground up and understand what exactly DNA is.

 

DNA is a long molecule of information that is rolled up and condensed into a ball present in our cell nuclei. A person has in each of these cells 46 balls of DNA that we call chromosome: 23 inherited from our biological mother and 23 from our father.

 

It is important to note that DNA manages almost all of our biological functions ; it is the carrier of our genetic information and also provides manufacturing instructions. 

Composition of DNA

DNA is therefore a molecule which is made up at its base of nucleotides . Without going into details, nucleotides are organic compounds formed from chemical elements . In total, there are 4 kinds of nucleotides symbolized by the letters A, C, G, and T :

How reliable is a DNA test?

The reliability of the results of a DNA test will depend on several factors:

1. Laboratory accreditation 

Checking the laboratory's accreditation allows you to be sure of the analytical methods that scientists use when looking for a parentage link. An accreditation is an international standard that a laboratory can acquire after verification of the entire process by an external committee.

An accreditation gives the laboratory the possibility of genetic analyses which may be legally accepted.

2. The declaration of your situation 

Be sure to communicate well the family situation before your order, your doubts and the possible relationships between the participants. The result of the DNA test will depend on your declaration, because it is linked to a deduction of possibility.

3. The type of test
 

All DNA tests are not equal on the probability ratio they offer, and depending on the basic situation several tests are possible and some more reliable than others.​ As a general rule, it is always advisable to do DNA tests directly with the person concerned. 

4. Type of sample

Reliability of results does not depend on sample type, but not all samples reliably provide enough genetic information to do a DNA test. 

In our DNA, the nucleotides group together in a more complex structure to form what are called amino acids . Moreover, this combination of nucleotides into amino acids regroups together to finally form the proteins of our body .

 

Proteins perform a multitude of functions within the body . They manage all our biological activity through the creation of molecules , the management of vital functions or the transmission of information . Depending on their roles, they can have different names (enzymes, myosin, histones…) 

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A gene is a strand in the DNA molecule . It is a segment of DNA which, depending on its expression, defines the role of its cell. (heart cell, liver cell or brain cell...)  

 

The role of the gene according to its cell thus determines  the existence of two major functions on the DNA molecule:

 

- The coding regions, which are used to produce and create new proteins

- The non-coding areas, which have more of a role in protein regulation

 

It is considered that the non-coding areas cover about 98% of our DNA.

 

Still with the same logic, the genes are just as rigorously positioned in a specific way on the DNA. This makes it easier to locate a particular gene, because its position remains unchanged in all human beings. 

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When a specific gene is located, it is then called a locus .

 

- For a coding DNA area , the locus is identified with the name of the protein used. 

- For a non-coding DNA zone , each locus is listed according to a specific code:  

 

The D18S52 locus: is located on chromosome 18, it supports a nucleotide sequence that is not found elsewhere and it bears the number 52, i.e. D18S52

DNA Genes

DNA is therefore a complex structure that brings together different chemical components in a double helix organization. Two long parallel and complementary strands of nucleotides linked together by molecular bonds.  

 

Know that in DNA, all its architecture and the relationship between nucleotides are rigorously hierarchized by chemical elements:

- In front of a G, there is always a C and vice-versa 

- In front of an A, there is always a T and vice versa

This rigorous organization allows the molecule to be duplicated very easily.  

Polymorphisms

Of course, human beings are all part of the same species with a huge number of similarities in nucleotide structure. However, our extraordinary diversity is rooted in minute variations

 

These variations between individuals are called polymorphisms and the analysis of a DNA sample allows us to observe these variations and compare them. By taking two individuals at random, we find about 1 variation every 1200 nucleotides. 

There are two types of variations depending on the coding or non-coding region of DNA.

 

- When the polymorphic variation is in a coding region, the variation is visible on the protein of the locus (structure of the nucleotide in amino acid, and the amino acids in protein)

 

- When the polymorphic variation is in a non-coding area, the variation is visible by the number of nucleotide repeats. This is called length polymorphism.

 

Length polymorphisms are repetitive sequences of nucleotides which can be repeated several times in a row like the group: AAGTA which can vary from one person to another and thus be repeated 11 times in one person, 14 times in a second person or 15 times at a third.

 

The term used to refer to the variants between individuals is “ Allele ”.  

 

During an analysis, an individual will each have two alleles for each genetic trait. One allele representing the variant present on the paternal chromosome and one allele representing   the variant present on the maternal chromosome. 

A repeating polymorphism sequence is composed of a minimum of 10 nucleotides. For this, it is commonly called VNTR (Variable Number Tandem Repeats) or minisatellite

 

A polymorphism sequence that repeats with a small number of nucleotides (less than 10), we then speak of STR (Short Tandem Repeat) or microsatellite

 

Short STR-like sequences have finally established themselves in genetic analysis because of their advantages: 

 

- they are numerous (about 50,000 sequences of this type in human DNA)

- they can be analyzed simultaneously (multiplex analysis)

 

On the other hand, they sometimes suffer from limited polymorphism.  

Repetitive Sequences: VNTR and STR

DNA analysis

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The first step in genetic analysis is DNA extraction and purification . To do this, you have to somehow  unhook the DNA molecule from its support and dissolve the substances that could interfere with the progress of the analysis. The scientists then immerse the sample in an aqueous medium which will eliminate all the external substances to finally retain only the DNA molecule.

Depending on the type of analysis, the STR sequences are  chosen and carefully cut with a natural protein: the restriction enzyme .

Restriction enzymes are particular proteins, because originating from bacteria, they have the ability to cut DNA molecules at specific sequences depending on the enzyme chosen. They are therefore widely used tools in genetic engineering and in biology laboratories. 

DNA extraction

The second step is PCR amplification . It is a method allowing from a scanty sample to quickly copy precise DNA sequences in very many copies . This copying technique which makes it possible to double the amount of DNA in a very short time is possible thanks to the discovery of the enzyme named " DNA polymerase "(protein) which allows the perfect reconstruction of a previously separated DNA helix.

PCR amplification is done with the mixture of the following active ingredients: 

- DNA sample  : previously cut segment

- Additional nucleotides  

- DNA primers : single strands complementary to the sample to be copied

- DNA polymerase :   enzyme which recognizes primers and assembles nucleotides to copy the target DNA

The mixture is subjected to rapid temperature variations in a programmed cycle.

 

Each cycle consists of 3 steps: 

90° denaturation to separate DNA helices into 2

-  45° hybridization to attach primers to DNA fragments

72° elongation which allows the reconstruction of missing DNA by the DNA polymerase enzyme using primers and added nucleotides

At each cycle, the number of copies is doubled . In 30 or 40 cycles, millions of copies of the target sequence are obtained.

PCR   (polymerase chain reaction)

The third step is the separation of DNA by electrophoresis . This method makes it possible , under the effect of an electric field, to separate the proteins from the DNA according to their size and their molecular weight . The experiment can be done in a tube or in a gel, and allows the observation of the migration of the DNA sequence according to its composition.

The fragments move according to their size towards the positive pole, because the DNA is negatively charged. The smaller the fragment, the faster (and therefore farther) it migrates. All the fragments of the same size form a recognizable line and make it possible to characterize their DNA content.

 

Thus, depending on the result of the migration after electrophoresis, the laboratory is able to determine the composition of the fragment: the number of nucleotides and its number of repetitions

The analysis of the fragments obtained by electrophoresis forms the genetic fingerprint of a person which can then be compared to determine a parentage link. Since the length of a particular fragment can vary from one individual to another, with the exception of identical twins, the probability that two people have the same genetic fingerprint is almost zero (1 in 3 billion).

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Read the results of a DNA test

The result of a DNA test schematizes the genetic analysis, making it possible to identify a person by his genetic fingerprint, or genetic profile. Each laboratory must provide on the result according to the test: information  identifications which make it possible to establish the link of biological filiation between individuals. 

Mitochondrial DNA Analysis

The mitochondrial DNA (mtDNA) test is a genetic analysis that does not use the genetic information that is in our DNA. It is a non-standard test, which is not oriented on the nuclear DNA present in our cells as previously, but rather on the analysis of the DNA of the mitochondria.

Mitochondria are ancient bacteria that entered a cell to form a symbiotic relationship,   millions of years ago. This relationship has transformed the bacterium into a real organelle for the  cell.

 

The  organelles   are small compartments specialized in certain functions that regulate the life and activity of the cell. The mitochondria is specialized today in the production of energy for the cell.

Mitochondrial DNA therefore corresponds to the DNA found inside the mitochondria, hence its name, and not to the DNA present in the nucleus of the cell which is the support of the genetic heritage of an individual.

Mitochondrial DNA is circular DNA that has several hundred mitochondria per cell and each contains about ten copies of its DNA. Thus it will therefore be present in several thousand copies whereas nuclear DNA is only present in two copies. For this reason, mitochondrial DNA can be isolated from old or very degraded samples where nuclear DNA is not detected. 

Mitochondria

Unlike nuclear DNA, mitochondrial DNA does not contain a repetitive sequence and inter-individual variations are sometimes visible on a single nucleotide . The polymorphism of mitochondrial DNA is therefore a polymorphism of structure (and not of repetition like that of nuclear DNA).


The analysis is carried out on these polymorphisms present in a non-coding region called the control region.

 

The sequences are amplified by PCR to then be detailed. This makes it possible to obtain the complete sequence of nucleotides. : this is the sequencing technique. 

 

This technique is quite  tedious to implement since it is necessary to order the entire area of the DNA to determine a variation which sometimes occurs on a single nucleotide ( on average, we find about 8 nucleotides of difference out of the 600 analyzed). 

Mitochondrial DNA analysis does not allow 100% identification of an individual , because several people can have the same mtDNA. But it can become very useful for verifying a relationship or a search for origins.  

Indeed, the particularity of this DNA is that it is transmitted strictly by the maternal route .   Indeed, during fertilisation, when the maternal egg and the paternal sperm merge, only the egg has mitochondria and allows its transmission.

This means that all sibling members will therefore possess the same mitochondrial DNA transmitted by their mother, who herself inherited it from her mother and so on  on the entire maternal line of 'a person.

One could then think that the whole human species has the same mitochondrial DNA since it has been transmitted unchanged to the following generations over the entire maternal line. Although it is possible that our species had the same mtDNA sequence, it is known that natural mutations appear from time to time. When this occurs in reproductive cells, the mutation is likely to be passed on to offspring.

It is thanks to mutations that accumulate over the evolution of the human species that the DNA of the descendants of each foreign family (unless you are maternal relatives) will always have a different mitochondrial DNA.  

Mitochondrial DNA Inheritance